Table 1 A list of XMPP services available from the XMPP server ws1.bmc.uu.se
Name | Service JID | Description |
|---|---|---|
CDK Service | cdk.ws1.bmc.uu.se | The CDK Service was implemented using the Chemistry Development Kit (CDK) [35], which was previously done with SOAP [58] and local Taverna nodes [59]. |
Descriptor Service | descriptor.ws1.bmc.uu.se | The Descriptor Service was implemented using the QSAR module of the Chemistry Development Kit (CDK) [35]. The services provides four common descriptors TPSA, BCUT, Lipinski's Rule-of-Five, and the XLogP described in reference [36]. |
Blast Service | blast.ws1.bmc.uu.se | A proxy service for the SOAP-based blast service provided by the Center for Information Biology and DNA Data Bank of Japan http://www.xml.nig.ac.jp/index.html |
HIVPred | hivpred.ws1.bmc.uu.se | A service for predicting the susceptibility of a mutated HIV protease sequence for seven known HIV inhibitors based on a Proteochemometrical model [34] was implemented as an XWS service. The service takes a mutated HIV protease sequence of 99 amino acids as input and outputs numerical values and remarks on model validity, coverage, and applicability for the input. |
XML Schemata Compatibility Service | bioschemata.ws1.bmc.uu.se | The XML Schemata Compatibility Service is a primitive demo XMPP service that delivers the following XML Schemata as function semantics: EMBL Nucleotide Sequence Database XML [28], Functional Genomics Experiment [29], Genomic Contextual Data Markup Language [30], Molecular Interaction XML Format [31], Systems Biology Markup Language [32], and UniProt Knowledgebase [33]. |
RDF Service | rdf.ws1.bmc.uu.se | The RDF Service shows how XMPP services can use RDF as IO format. |