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Table 2 2LOmb identifies 11 intronic SNPs, which are located in four genes, from the reduced T2D data.

From: Detecting purely epistatic multi-locus interactions by an omnibus permutation test on ensembles of two-locus analyses

Gene

Chromosome and Location

Two-SNP Unit in the Ensemble

PGM1 (phosphoglucomutase 1)

1p31

(rs2269241, rs3790857)

  

(rs2269239, rs3790857)

  

(rs3790857, rs2269238)

LMX1A (LIM homeobox transcription factor 1, alpha)

1q22-q23

(rs2348250, rs6702087)

PARK2 (Parkinson disease (autosomal recessive, juvenile) 2, parkin)

6q25.2-q27

(rs1893551, rs6924502)

GYS2 (glycogen synthase 2 (liver))

12p12.2

(rs6487236, rs1871142)

  

(rs1871142, rs10770836)

  1. Association between these SNPs and the disease is possible (global p-value < 0.0001). Seven two-SNP units are present in the ensemble where each unit contains a pair of SNPs from the same gene.
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BMC Bioinformatics

ISSN: 1471-2105

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