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Table 7 Experimental results on the improved eukaryotic benchmark.

From: Discovering multiple realistic TFBS motifs based on a generalized model

Algorithms

Markov

Real

 

nSn

nPPV

nPC

nCC

nSn

nPPV

nPC

nCC

GALF-G

0.117

0.184

0.102

0.138

0.116

0.156

0.095

0.126

MEME

0.115

0.107

0.077

0.097

0.103

0.092

0.063

0.083

Weeder

0.133

0.043

0.032

0.052

0.202

0.071

0.055

0.096

  1. Average performances (nSn, nPPV, nPC and nCC) of GALF-G, MEME and Weeder on the algorithm benchmark suite (50 datasets with Markov backgrounds and 50 with real backgrounds).
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BMC Bioinformatics

ISSN: 1471-2105

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