Table 2 Effect of motif length on clustering performance.
From: Clustering of protein domains for functional and evolutionary studies
motif length | |||||||
|---|---|---|---|---|---|---|---|
5 | 10 | 15 | 20 | 25 | 30 | ||
Protein family | false assignments | No. sequences | |||||
Nucleotidyl cyclases | 0 | 0 | 0 | 0 | 0 | 0 | 75 |
Protein kinases | 0 | 0 | 0 | 0 | 0 | 0 | 215 |
MDH/LDH | 5 | 6 | 5 | 5 | 4 | 4 | 183 |
AT-domains | 2 | 3 | 4 | 4 | 5 | 5 | 181 |
KR-domains | 20 | 18 | 20 | 17 | 10 | 9 | 72 |
sHSP | 10 | 13 | 14 | 11 | 5 | 5 | 214 |