Identification of ATP binding residues of a protein from its primary sequence

BMC Bioinformatics

Table 3 The Performance of SVM model (Learning Parameter: g: 0.01 c: 4 j: 1) Using PSI-BLAST Profile

Threshold	Sensitivity	Specificity	Accuracy	MCC
-1	98.52	15.47	57	0.25
-0.9	97.93	20.43	59.18	0.29
-0.8	96.55	25.2	60.87	0.31
-0.7	95.07	30.68	62.88	0.34
-0.6	93.27	36.96	65.11	0.37
-0.5	90.87	43.59	67.23	0.39
-0.4	88.44	50.1	69.27	0.42
-0.3	85.48	56.34	70.91	0.44
-0.2	82	63.34	72.67	0.46
0	74.44	75.79	75.11	0.50
*0.1*	*70.01*	*80.39*	*75.2*	*0.51*
0.2	65.41	84.4	74.9	0.51
0.3	60.32	87.78	74.05	0.5
0.4	55.85	90.6	73.23	0.5
0.5	51.22	92.97	72.09	0.49
0.6	46.39	94.58	70.48	0.47
0.7	40.21	96.12	68.17	0.44
0.8	34.63	97.44	66.03	0.41
0.9	28.65	98.03	63.34	0.37
1	21.78	98.92	60.35	0.33

(Italic-bold values indicate the point where sensitivity and specificity is roughly equal and Bold values indicate point where maximum Accuracy and MCC.)

ISSN: 1471-2105