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Table 9 Secondary structure prediction on PDB-Select25 dataset.

From: Prediction of backbone dihedral angles and protein secondary structure using support vector machines

PDB-Select25

Measure

Subset1

Subset2

Q3 (%)

79.7

79.7

ErrSig

0.24

0.24

Q H (%)

82.3

82.6

Q E (%)

71.9

71.3

Q C (%)

81.8

82.1

C H

0.76

0.76

C E

0.69

0.69

C C

0.62

0.62

Info

0.43

0.43

  1. The second column shows the predictions for subset1 when SVMs are trained using subset2 and the converse is shown at the third column. Info is a measure of the per-residue information content [4].