BMC Bioinformatics

Table 7 Classification Performance on the Local Structure Alphabet Dataset.

From: svm PRAT: SVM-based Protein Residue Annotation Toolkit

	w= f= 5		w= f= 7		w= f= 9
	ROC	Q ₁₆	ROC	Q ₁₆	ROC	Q ₁₆
	0.82	64.9	0.81	64.7	0.81	64.2
	0.83	67.3	0.82	67.7	0.82	67.7
	0.84	66.4	0.84	66.9	0.83	67.2
	0.85	68.0	0.84	68.5	0.83	68.9**

w = f gave the best results on testing on few sample points, and hence due to the expensive nature of this problem, we did not test it on a wide set of parameters. ** denotes the best scoring model based on the Q₁₆ scores. For this best model the se rate of 0.21.

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