Table 3 Test statistic ranks of the 10 true positive genes obtained after glog, lowess, combination of glog and lowess, combination of lowess and enhanced quantile, union and intersection gene lists.
From: A comparison on effects of normalisations in the detection of differentially expressed genes
ID | Symbol | lower | FC | upper | raw | glog | lowess | glog+lowess | lowess+enhancedQ |
|---|---|---|---|---|---|---|---|---|---|
BL-003F10 | PBX2 | -2.02 | -3.42 | -4.83 | 130 | 474 | 158 | 26 | 179 |
BL-003F10 | PBX2 | -1.95 | -3.36 | -4.77 | 139 | 486 | 172 | 32 | 178 |
2-014C09 | BTG1 | -0.09 | -1.94 | -3.8 | 1080 | 7088 | 3302 | 741 | 556 |
BL-010C07 | DLEU2 | -0.99 | -1.91 | -2.83 | 275 | 902 | 529 | 163 | 613 |
BL-010C07 | DLEU2 | -0.81 | -1.79 | -2.77 | 375 | 955 | 538 | 184 | 624 |
2-025D04 | CEBPA | 2.51 | 1.53 | 0.54 | 527 | 1976 | 461 | 1462 | 2191 |
2-029B10 | FUS | -0.2 | -1.51 | -2.81 | 746 | 7268 | 543 | 855 | 1101 |
2-025D04 | CEBPA | 2.52 | 1.31 | 0.11 | 660 | 5228 | 1243 | 1678 | 677 |
2-029B10 | FUS | -0.41 | -1.23 | -2.05 | 685 | 1236 | 820 | 385 | 1421 |
2-019A01 | CAV1 | -0.05 | -1.2 | -2.34 | 1960 | 6519 | 1962 | 8034 | 1595 |