From: A fast algorithm for genome-wide haplotype pattern mining
Crohn's disease running times | |||
---|---|---|---|
Chromosome | # markers | Original HPM (with optimisation) | New HPM |
1 | 40220 | 9 hours, 16 minutes | 4 hours, 51 minutes |
2 | 41400 | 9 hours, 37 minutes | 4 hours, 54 minutes |
3 | 33799 | 7 hours, 48 minutes | 4 hours, 1 minutes |
4 | 32334 | 7 hours, 31 minutes | 3 hours, 55 minutes |
5 | 32056 | 7 hours, 20 minutes | 3 hours, 59 minutes |
6 | 31470 | 7 hours, 16 minutes | 3 hours, 48 minutes |
7 | 25835 | 5 hours, 52 minutes | 3 hours, 09 minutes |
8 | 27457 | 6 hours, 11 minutes | 3 hours, 21 minutes |
9 | 22864 | 5 hours, 13 minutes | 2 hours, 50 minutes |
10 | 28501 | 6 hours, 35 minutes | 3 hours, 25 minutes |
11 | 26273 | 6 hours, 8 minutes | 3 hours, 11 minutes |
12 | 24954 | 5 hours, 38 minutes | 3 hours, 5 minutes |
13 | 19188 | 4 hours, 19 minutes | 2 hours, 19 minutes |
14 | 15721 | 3 hours, 37 minutes | 1 hour, 54 minutes |
15 | 14355 | 3 hours, 16 minutes | 1 hour, 47 minutes |
16 | 15308 | 3 hours, 35 minutes | 1 hour, 53 minutes |
17 | 11281 | 2 hours, 37 minutes | 1 hour, 23 minutes |
18 | 14881 | 3 hours, 28 minutes | 1 hour, 44 minutes |
19 | 6399 | 1 hours, 28 minutes | 43 minutes |
20 | 12400 | 2 hours, 53 minutes | 1 hour, 23 minutes |
21 | 7125 | 1 hour, 38 minutes | 51 minutes |
22 | 6207 | 1 hour, 27 minutes | 44 minutes |