Enzymes | Domain investigated | E-value | NSH**** | NGH**** | NGH/NSH (%)**** |
|---|
C3H | PTHR19383:SF44 | 1.00E-30 | 993 | 14 | 1.5 |
F5H | PTHR19383:SF46 | 1.00E-30 | 990 | 15 | 1.5 |
C4H | PTHR19383:SF33 | 1.00E-30 | 530 | 18 | 3.4 |
4CL | PTHR11968:SF43 | 1.00E-30 | 2212 | 120 | 5.4 |
CAD | PTHR11695:SF38 | 1.00E-30 | 1022 | 110 | 10.8 |
HCT | PF02458 | 1.00E-30 | 279 | 37 | 13.3 |
CCOAMT | PTHR10509 | 1.00E-30 | 61 | 55 | 90.2 |
CCR* | PTHR10366:SF9 | 1.00E-24 | 207 | 207 | 100.0 |
PAL** | PF00221/TIGR01226 | 1.00E-30 | 55 | 55 | 100.0 |
COMT*** | PIRSF005739 | 1.00E-08 | 187 | 187 | 100.0 |
Total | 11 | Na | 6536 | 818 | Na |
- Summary results from different steps of gene identification including Blastp and InterproScan analysis are presented along with the functional domains used for protein identification.
- * We used E value cutoff of e-24 for CCR gene identification, which is supported by the functional domain data.
- **The identification of PAL genes involved two domains.
- *** The E value cutoff for COMT gene identification is e-08, which is supported by the functional domain data.
- ****Number of sequence homologs (NSH), Number of gene homologs (NGH), and Pentage of the NGH in the NSH were included.
- CAD: Cinnamyl alcohol dehydrogenase
- PAL: L-Phenylalanine ammonia-lyase
- CCOAMT: Cinnamoyl CoA O-methyltransferase
- COMT: Caffeic acid O-methyltransferase
- 4CL: 4-Coumarate:coenzyme A(CoA) ligase
- CCR: Cinnamoyl-CoA reductase
- C4H: Cinnamate-4-hydroxylase
- HCT: Hydroxycinnamoyl transferase
- C3H: 4-Coumarate 3-hydroxylase
- F5H: Ferulate 5-hydroxylase
