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Table 1 Summary of the data integrated and stored in the PASS database

From: Extraction, integration and analysis of alternative splicing and protein structure distributed information

Source and type of data

Total

% of total in Ensembl

% of total in ASD

Ensembl

genes

22,997

100.00

-

 

isoforms

46,951

100.00

-

ASD

genes

9,945

43.24

100.00

 

isoforms

32,079

68.32

100.00

 

alternative splicing events

52,248

-

-

PDB

structures

111,015

-

-

Ensembl genes with a resolved structure (from PICR)

3,480

15.13

-

Mapping from BLAST against PDB

genes

953

4.14

9.58

 

isoforms

3,056

6.51

9.53

Alignments produced by CLUSTALW

genes

599

2.60

6.02

 

isoforms

2,149

4.58

6.70

Results from FeatureMap3D

genes

480

2.09

4.83

 

isoforms

1,569

3.34

4.89

 

residues

768,477

-

-

 

structures

5,604

-

-