Table 2 Clustering results for Build_Fam, OrthoMCL and TribeMCL
From: Databases of homologous gene families for comparative genomics
| Â | Build_Fam | Ortho_MCL | Tribe_MCL | |||||
|---|---|---|---|---|---|---|---|---|
Parameters | 50/80 | 40/80 | E-value | HSP | 1.5 | 4.0 | E-value | HSP |
Nb. clustered seq. | 119222 | 144956 | 157993 | 186779 | 171129 | 169507 | 157993 | 186779 |
% clustered seq. | 54% | 66% | 72% | 85% | 78% | 77% | 72% | 85% |
Nb. families | 20706 | 17043 | 19608 | 19344 | 23966 | 31343 | 19608 | 19344 |
Avg. seq./family | 5.76 | 8.51 | 8.06 | 9.66 | 7.14 | 5.41 | 8.06 | 9.66 |
Families ≥ 1000 | 1 | 6 | 1 | 1 | 0 | 0 | 1 | 1 |
Largest family | 1580 | 2642 | 1121 | 1185 | 479 | 281 | 1121 | 1185 |
Families sp. = 1 | 10359 (50%) | 8050 (47%) | 8379 (43%) | 6735 (35%) | 7828 (33%) | 10134 (32%) | 8379 (43%) | 6735 (35%) |
Families sp. = 50 | 13 (0.6‰) | 34 (2‰) | 19 (1‰) | 30 (1.6‰) | 27 (1.1‰) | 5 (0.2‰) | 19 (1‰) | 30 (1.6‰) |
Familles sp. ≥ 25 | 504 (2.4%) | 620 (3.6%) | 630 (3.2%) | 744 (3.9%) | 734 (3.1%) | 554 (1.8%) | 630 (3.2%) | 744 (3.9%) |