From: Prodigal: prokaryotic gene recognition and translation initiation site identification
Organism | Genbank Genes with no Joins | Prodigal 1.20 | Prodigal 1.20+TiCo | Prodigal 1.20+TriTisa | GenemarkHMM 2.6 | Glimmer 3.02 | EasyGene 1.2 | MED 2.0 |
---|---|---|---|---|---|---|---|---|
Escherichia coli K12 | 4268 | 4118/3823 (96.5%/89.6%) | 4118/3779 (96.5%/88.5%) | 4118/3778 (96.5%/88.5%) | 4122/3685 (96.6%/86.3%) | 4076/3563 (95.5%/83.5%) | 3977/3565 (93.2%/83.5%) | 4102/3711 (96.1%/86.9%) |
Halobacterium salinarum | 2110 | 2062/1857 (97.7%/88.0%) | 2062/1809 (97.7%/85.7%) | 2061/1790 (97.6%/84.8%) | 2042/1676 (96.7%/79.4%) | 2054/1609 (97.3%/76.2%) | 2018/1692 (95.6%/80.2%) | 2008/1469 (95.1%/69.6%) |
Natronomonas pharaonis | 2661 | 2630/2398 (98.8%/90.1%) | 2630/2358 (98.8%/88.6%) | 2630/2348 (98.8%/88.2%) | 2624/2251 (98.6%/84.6%) | 2622/2220 (98.5%/83.4%) | 2548/2271 (95.7%/85.3%) | 2586/1953 (97.2%/73.4%) |
Bacillus subtilis | 4174 | 4113/3705 (98.5%/88.8%) | 4113/3678 (98.5%/88.1%) | 4113/3679 (98.5%/88.1%) | 4136/3713 (99.1%/89.0%) | 4102/3569 (98.3%/85.5%) | 3977/3578 (95.3%/85.7%) | 4127/3596 (98.9%/86.2%) |
Aeropyrum pernix | 1699 | 1670/1430 (98.3%/84.2%) | 1670/1363 (98.3%/80.2%) | 1670/1353 (98.3%/79.6%) | 1672/1364 (98.4%/80.3%) | 1671/1317 (98.4%/77.5%) | 1652/1389 (97.2%/81.8%) | 1689/1309 (99.4%/77.1%) |
Synechocystis PCC6803 | 3171 | 3146/2587 (99.2%/81.6%) | 3146/2364 (99.2%/74.6%) | 3146/2447 (99.2%/77.2%) | 3124/2337 (98.5%/73.7%) | 3123/2236 (98.5%/70.5%) | 3053/2288 (96.3%/72.2%) | 3126/2192 (98.6%/69.1%) |
Pseudomonas aeruginosa | 5565 | 5514/5038 (99.1%/90.5%) | 5514/4885 (99.1%/87.8%) | 5514/4821 (99.1%/86.6%) | 5484/4698 (98.5%/84.4%) | 5491/4705 (98.7%/84.5%) | 5522/4761 (99.2%/85.5%) | 5292/4539 (95.1%/81.6%) |