From: New statistical potential for quality assessment of protein models and a survey of energy functions
Scoring function | models only | native included | |||
---|---|---|---|---|---|
 | Average a | Ranked 1 b | Average c | Raw average d | Ranked 1 e |
QMEAN6 | 2.87 | 85 | 1.71 | 3.26 | 113 |
QMEAN-all_atom | 3.59 | 74 | 1.71 | 2.9 | 119 |
QMEAN-SSE_agree | 3.74 | 62 | 3.72 | 9.62 | 39 |
QMEAN-ACC_agree | 4.04 | 40 | 3.78 | 8.83 | 48 |
RF_CB_SRS_OD | 4.16 | 61 | 2.08 | 3.6 | 110 |
RF_CB_OD | 4.62 | 62 | 2.00 | 3.65 | 111 |
RF_HA_SRS | 4.65 | 49 | 1.38 | 1.66 | 137 |
RF_CB_SRS | 4.72 | 56 | 2.18 | 3.46 | 114 |
OPUS_CA | 4.72 | 79 | 5.13 | 9.93 | 55 |
VSCORE-combined | 4.79 | 53 | 2.20 | 3.79 | 117 |
QMEAN-pairwise | 4.80 | 54 | 3.15 | 5.86 | 85 |
Rosetta | 5.01 | 57 | 4.09 | 8.03 | 68 |
Dong-pair | 5.01 | 58 | 6.32 | 14.41 | 4 |
RF_CB | 5.06 | 52 | 2.46 | 4.31 | 106 |
VSCORE-pair | 5.08 | 54 | 1.85 | 2.81 | 128 |
PROSA-combined | 5.11 | 57 | 3.38 | 6.27 | 87 |
OPUS_PSP | 5.39 | 54 | 2.99 | 4.11 | 118 |
RF_HA | 5.44 | 62 | 2.78 | 4.37 | 112 |
DOPE | 5.77 | 54 | 3.27 | 5.97 | 95 |
dFIRE | 6.03 | 50 | 5.69 | 11.8 | 33 |
PROSA-pair | 6.03 | 56 | 3.54 | 6.02 | 95 |
QMEAN-torsion | 6.71 | 45 | 3.24 | 4.66 | 114 |
Shortle2006 | 6.85 | 35 | 1.79 | 2.54 | 129 |
Liang_geometric | 6.88 | 44 | 2.48 | 3.94 | 114 |
QMEAN-solvation | 7.32 | 33 | 6.27 | 10.87 | 54 |
Shortle2005 | 7.73 | 42 | 3.39 | 5.19 | 109 |
Floudas-CM | 7.75 | 38 | 7.05 | 12.77 | 42 |
Floudas-Ca | 7.79 | 33 | 8.36 | 16.01 | 10 |
NAMD 1000 | 8.06 | 24 | 4.96 | 8.56 | 78 |
Melo-ANOLEA | 9.62 | 19 | 5.19 | 8.37 | 86 |
PC2CA | 9.75 | 19 | 5.06 | 8.35 | 85 |
Melo-NL | 9.99 | 14 | 5.85 | 9.45 | 80 |
NAMD 1 | 11.91 | 5 | 10.98 | 18.04 | 24 |
Random¶ | 9.72 | 13.9 | 10.1 | 10.1 | 8.3 |