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Figure 4 | BMC Bioinformatics

Figure 4

From: TimeDelay-ARACNE: Reverse engineering of gene networks from time-course data by an information theoretic approach

Figure 4

TimeDelay-ARACNE SOS predicted network and SOS pathway reference. a) E. coli SOS pathway; b) TNSI inferred graph; c) TD-ARACNE inferred graph; d) Banjo inferred graph. TSNI and Banjo are used with default settings reported in their manuals. TD-ARACNE finds lexA correctly as the HUB, recovers 6 edges correctly, 1 edge has wrong direction. TD-ARACNE again better recover E. coli SOS pathway than other algorithms. Here we represent true positives as straight connections, dotted lines are false positives, false negatives are not reported and considered in the tables of PPV and recall. Missing verse on the connection means that the algorithm recovers the wrong verse.

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BMC Bioinformatics

ISSN: 1471-2105

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