TimeDelay-ARACNE: Reverse engineering of gene networks from time-course data by an information theoretic approach

BMC Bioinformatics

Table 5 TimeDelay-ARACNE test on the IRMA in vivo synthetic network.

	TimeDelay-ARACNE			TSNI			Banjo			ARACNE
	PPV	Recall	F -score	PPV	Recall	F -score	PPV	Recall	F -score	PPV	Recall	F -score
	Switch ON network
5 genes network	0.71	0.67	0.69	0.80	0.50	0.61	0.30	0.25	0.27	0.5	0.6	0.54
simplified network	0.80	0.67	0.73	1.0	0.67	0.80	-	-	-	0.5	0.5	0.5
	Switch OFF network
5 genes network	0.37	0.60	0.46	0.60	0.38	0.46	0.6	0.38	0.46	0.25	0.33	0.28
simplified network	0.50	0.75	0.60	0.75	0.5	0.60	-	-	-	0.5	0.6	0.54

ISSN: 1471-2105