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Table 6 Most significant GO nodes

From: Response network analysis of differential gene expression in human epithelial lung cells during avian influenza infections

Significant GO Nodes at 24 Hours

GO-ID

 

p-value

 

corr p-val

 

sel.

 

tot.

 

Description

 

Genes in test set

2376

2.4009E-16

1.8007E-13

35

783

immune system

IFIH1, IFITM1, IFITM3, G1P3, OAS3, PRKR

     

process

TLR2, ISG15, OAS1, C1S, OAS2, ISGF3G

      

CXCL11, CCL5, HSH2D, BF, PGLYRP4 TAP1

      

MX1, SPON2, MX2, EDG6, EXO1, EGR1, ZFP36

      

CHST4, HLA-DQA2, AIM2, PDCD1LG1, IKBKE, CD34

      

IRF7, IFIT5, DMBT1, GBP1

6955

6.2296E-16

4.6722E-13

31

613

immune

IFIH1, IFITM1, IFITM3, TLR2, G1P3, OAS3

     

response

PRKR, ISG15, OAS1, C1S, OAS2, ISGF3G

      

CXCL11, CCL5, BF, PGLYRP4, TAP1, MX1

      

SPON2, MX2, EDG6, EXO1, CHST4, HLA-DQA2, AIM2

      

PDCD1LG1, IKBKE, IRF7, IFIT5, DMBT1, GBP1

51869

4.4363E-13

3.3273E-10

54

2335

response to

PIR51, PRKR, G1P3, TLR2, ISG15, ISGF3G

     

stimulus

CXCL11, CALB1, FOS, PGLYRP4, MX1, SPON2

      

FANCA, CCNA2, MX2, IHPK3, CYR61, RAMP

      

EDG6, ZFP36, ECGF1, SAA4, CHST4, FOSB

      

HLA-DQA2, RAD51, PDCD1LG1, UHRF1, GADD45B

      

PROS1, GBP1, IFIH1, IFITM1, IFITM3

      

OAS3, OAS1, CHEK1, OAS2, C1S, CCL5

      

BF, TYMS, TAP1, EXO1, GSTA3, SGK, STAT1

      

ABCG1, AIM2, IKBKE, DUSP1, IRF7, IFIT5, DMBT1

7049

1.8839E-10

1.4129E-7

28

808

cell cycle

E2F1, PRC1, IFITM1, HCAP-G, PRKR, CHEK1

      

MCM10, CCNE2, SPC25, CDC45L, CCNA2

      

EXO1, CDC6, MKI67, NUSAP1, FOSB, STAT1

      

MCM6, RAD51, UHRF1, PLK3, DUSP1 KNTC2

      

JUN, TOPK, FOXC1, GADD45B, DMBT1

22402

4.4621E-9

3.3466E-6

24

690

cell cycle

EXO1, E2F1, CDC6, IFITM1, MKI67, PRC1

     

process

HCAP-G, NUSAP1, CHEK1, FOSB, MCM10, STAT1

      

RAD51, CCNE2, SPC25, PLK3, CDC45L, KNTC2

      

JUN, TOPK, FOXC1, GADD45B, CCNA2, DMBT1

9615

5.9766E-9

4.4825E-6

10

91

response

IFIH1, IRF7, PRKR, ISG15, OAS1, ISGF3G

     

to virus

CCL5, MX1, STAT1, MX2

6260

8.9240E-9

6.6930E-6

13

188

DNA

EXO1, CDC6, ECGF1, MCM10, ORC1L, TK1

     

replication

RAD51, MCM6, CCNE2, TYMS, CDC45L, PFS2, RAMP

9607

2.1548E-8

1.6161E-5

14

241

response to

IFIH1, IFITM1, IFITM3, PRKR, ISG15, OAS1

     

biotic stimulus

ISGF3G, STAT1, CCL5, PGLYRP4, IRF7, MX1

      

MX2, DMBT1

51707

5.8349E-8

4.3762E-5

12

182

response to

IFIH1, PGLYRP4, IRF7, PRKR, ISG15, OAS1

     

other organism

ISGF3G, CCL5, MX1, STAT1, MX2, DMBT1

6950

5.9053E-7

4.4290E-4

24

894

response to

EXO1, ZFP36, GSTA3, PIR51, SGK, TLR2

     

stress

SAA4, CHST4, CHEK1, C1S, CCL5, CXCL11, RAD51

      

BF, TYMS, FOS, UHRF1, DUSP1, GADD45B, PROS1

      

CCNA2, FANCA, IHPK3, RAMP

74

1.7011E-6

1.2758E-3

17

506

reg. of prog.

E2F1, CDC6, MKI67, IFITM1, NUSAP1, CHEK1

     

through cell cycle

FOSB, STAT1, MCM10, CCNE2, PLK3, CDC45L

      

JUN, FOXC1, GADD45B, CCNA2, DMBT1

51726

1.8935E-6

1.4202E-3

17

510

regulation of .

E2F1, CDC6, MKI67, IFITM1, NUSAP1, CHEK1

     

cell cyc

FOSB, STAT1, MCM10, CCNE2, PLK3, CDC45L

      

JUN, FOXC1, GADD45B, CCNA2, DMBT1

6270

3.1656E-6

2.3742E-3

5

27

DNA replication initiation

CCNE2, CDC6, CDC45L, ORC1L, MCM6

51706

6.8716E-6

5.1537E-3

12

285

multi-organism

IFIH1, PGLYRP4, IRF7, PRKR, ISG15, OAS1

     

process

ISGF3G, CCL5, MX1, STAT1, MX2, DMBT1

6259

9.7883E-6

7.3412E-3

19

704

DNA metabolic

EXO1, CDC6, PIR51, ECGF1, CHEK1, MCM10

     

process

ORC1L, MCM6, TK1, RAD51, CCNE2, TYMS, FOS

      

UHRF1, CDC45L, PFS2, FANCA, IHPK3, RAMP

6263

1.9790E-5

1.4843E-2

7

96

DNA-dependent DNA replic.

EXO1, CCNE2, CDC6, CDC45L, ORC1L, MCM6, RAD51

278

2.0740E-5

1.5555E-2

11

267

mitotic cell cycle

E2F1, SPC25, CDC6, KNTC2, PRC1, HCAP-G

      

NUSAP1, TOPK, FOXC1, CHEK1, CCNA2

9719

2.9713E-5

2.2285E-2

12

330

response to

EXO1, TYMS, UHRF1, PIR51, SGK, CHEK1

     

endogenous stim.

FANCA, CCNA2, IHPK3, ABCG1, RAD51, RAMP

6952

4.3825E-5

3.2869E-2

15

520

defense response

ZFP36, IFIH1, TLR2, SAA4, CHST4, C1S

      

CXCL11, CCL5, BF, FOS, PGLYRP4, TAP1, MX1

      

MX2, DMBT1

6974

4.8613E-5

3.6459E-2

11

293

response to DNA

EXO1, TYMS, UHRF1, PIR51, SGK, CHEK1

     

damage stim.

FANCA, CCNA2, IHPK3, RAD51, RAMP

279

5.9994E-5

4.4996E-2

10

248

M phase

EXO1, SPC25, CDC6, KNTC2, HCAP-G, NUSAP1

      

TOPK, CHEK1, CCNA2, RAD51

22403

6.1999E-5

4.6500E-2

11

301

cell cycle phase

EXO1, E2F1, SPC25, CDC6, KNTC2, HCAP-G

      

NUSAP1, TOPK, CHEK1, CCNA2, RAD51

  1. The most significant GO nodes are given with their raw p-values. Under each GO entry is a list of the genes associated with that node.