Table 2 Number of 'unpositioned' SNPs assigned to specific chromosomes by LODE.
ambiguous (multi-hits against Btau4.0) | 'Un' (assignment to 'Un' sequence) | unaligned (no hit against Btau4.0) | Total 'unpositioned' | |
|---|---|---|---|---|
SNPs (>0.05 MAF) positioned by LODE | 2006/2082 (96.3) | 1466/1625 (90.2) | 1085/1132 (95.8) | 4557/4839 (94.2) |
SNPs (0.01<MAF ≤ 0.05) positioned by LODE | 54/209 (25.8) | 33/145 (22.8) | 44/121 (36.4) | 131/475 (27.6) |
Total SNPs positioned by LODE | 2060/2291 (89.9) | 1499/1770 (84.7) | 1129/1253 (90.1) | 4688/5314 (88.2) |
All 'unpositioned' SNPs | 2291 | 1770 | 1253 | 5314 |