Table 2 Input datasets and effects of log approximation on consensus tree.
From: FPGA acceleration of the phylogenetic likelihood function for Bayesian MCMC inference methods
Dataset | Taxa | Chars | Gen. for SW conv | % root nodes eval | RF distance between consensus tree from the SW (base) and consensus tree from HW |
|---|---|---|---|---|---|
m993 [33] | 63 | 963 | 50 K | 3.8% | 9 |
m1319 [34] | 37 | 1366 | 100 K | 6.2% | 3 |
m346 [35] | 64 | 1620 | 100 K | 3.8% | 7 |
m1038 [36] | 297 | 2021 | >500 K | 1.0% | 21 |
m1485 [37] | 63 | 3009 | 100 K | 3.8% | 13 |
m4056 [38] | 434 | 9563 | >500 K | 1.2% | 56 |
m3631 [39] | 191 | 13568 | >500 K | 1.7% | 23 |