Figure 2
From: Dynamics based alignment of proteins: an alternative approach to quantify dynamic similarity
Analysis of the DFM of PSD-95 PDZ3. (A) shows the dynamic fingerprint matrix (DFM). Regions where the distance fluctuation gives a high standard deviation, σ, are indicated as red. Low σ values are indicated as blue. (B) Example dynamic 'profile' for residue 25 (F325 of PDZ3 of PSD-95). (C) Average fluctuation profile (the mean value of σ for residue i) compared to the RMSF profile.