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Table 2 Prediction results for all-against-all gapless cross-threading of 333 proteins

From: Orientation-dependent backbone-only residue pair scoring functions for fixed backbone protein design

Residue pair scoring function

Percentile rank of native sequence

Median percentile rank

 

0.001%

0.01%

0.1%

 

1D

118 (35.4%)

209 (62.8%)

261 (78.4%)

2.47 × 10-3

3D

121 (36.3%)

240 (72.1%)

286 (85.9%)

1.98 × 10-3

6D

125 (37.5%)

247 (74.2%)

293 (88.0%)

1.66 × 10-3

  1. The number of structures for which the percentile rank of the native sequence was less than or equal to the indicated cutoffs are given in columns 2-4 and the median percentile rank is given in the last column. The corresponding percentage of the total structures is given in parentheses. The threading solutions were ranked using the indicated residue pair scoring function.
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BMC Bioinformatics

ISSN: 1471-2105

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