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Table 4 Total scores and CPU times at larger sample sizes.

From: Calibur: a tool for clustering large numbers of protein decoys

Max sample size

Average TM-score

Total C α RMSD

Total CPU Time (s)

16000

0.581143

283.749

28857.2

19000

0.582325

281.589

38928.9

22000

0.580996

279.887

45916

25000

0.581545

283.549

47083.1

28000

0.58272

278.243

50669.4

31000

0.581805

282.32

53582.2

  1. Average TM-score and total C α RMSD for the best decoys obtained, as well as the total CPU time used, on the sampled sets of maximum sizes 16000, 19000, 22000, 25000, 28000 and 31000.
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BMC Bioinformatics

ISSN: 1471-2105

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