From: A classification model for distinguishing copy number variants from cancer-related alterations
 | CBS smoothed |  | GLAD | CBS unsmoothed | ||
---|---|---|---|---|---|---|
Variable | w. DS | w/o DS | w. DS | w/o DS | w. DS | w/o DS |
Relative height | 60.33 | 79.86 | 81.26 | 100.96 | 101.99 | 119.94 |
Break | 39.98 | 51.92 | 48.57 | 65.75 | 60.33 | 72.19 |
Close to other candidates | 8.27 | 10.83 | 4.18 | 6.90 | 6.19 | 8.20 |
Overlap with CNAs | 17.21 | 24.15 | 17.87 | 27.10 | 26.16 | 34.09 |
Database score | 165.44 | Â | 206.34 | Â | 108.89 | Â |
Overlap w. other pts: % | 70.11 | 107.05 | 95.23 | 129.03 | 74.62 | 93.67 |
Matching bkpts in other: % | 86.67 | 108.45 | 94.02 | 135.80 | 116.34 | 116.83 |
Overlap with other pts | 39.91 | 59.70 | 42.18 | 68.84 | 86.42 | 98.28 |
Closeness to centromere | 4.37 | 5.82 | 3.74 | 6.07 | 4.64 | 7.17 |
Closeness to telomere | 4.65 | 6.53 | 3.31 | 5.52 | 6.04 | 7.11 |
Length | 112.20 | 133.69 | 64.26 | 92.25 | 170.78 | 182.46 |
Dat. score of other cand. | 30.23 | Â | 32.57 | Â | 44.51 | Â |
Percent of Normal | 64.10 | 84.05 | 55.97 | 76.26 | 77.18 | 93.82 |
Segmental duplication | 3.19 | 7.77 | 3.48 | 9.53 | 5.16 | 9.34 |
Sign | 7.84 | 11.01 | 8.19 | 12.42 | 22.59 | 27.77 |
Surrounded by Normals | 1.87 | 4.67 | 5.03 | 6.66 | 3.34 | 5.21 |