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Table 1 Comparison of running time between regular and fast UFF

From: UFFizi: a generic platform for ranking informative features

Dataset

Regular UFF Matlab

Fast UFF Matlab

Regular UFF C++

Fast UFF C++

Melanoma Size = [69 × 22283]

15.3

0.76

94.6

0.5

HIV Size = [40 × 22283]

5.4

0.63

26.7

0.19

Hepatitis C Size = [78 × 54675]

45.3

1.9

300.2

1.5

  1. Running was performed both on Matlab and using a compiled C++ executable. All runs were performed on a single computer. Time is specified in seconds (Difference in running time of Matlab and C++ UFF implementation is due to difference in SVD calculation times. C++ implementation uses external linear algebra package - Lapack++).
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BMC Bioinformatics

ISSN: 1471-2105

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