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Figure 3 | BMC Bioinformatics

Figure 3

From: Improving de novo sequence assembly using machine learning and comparative genomics for overlap correction

Figure 3

Visualizing alignments of contigs. Contigs of assembled E. coli MG1655 reads from the uncorrected (top) and J48 corrected (bottom) overlaps were mapped to the MG1655 genome using SNAPPER and ordered in respect to their position. MAUVE was used to visualize alignments of assembled contigs to the reference genome. Each segment represents a matching alignment between the contigs and reference genome. There may be more than one segment per contig. Red vertical lines represent contig boundaries. Colored blocks represent regions where contigs are in the correct order. Colored lines connect corresponding blocks between the reference genome and the assembled contigs. White spaces within the blocks within the reference genome indicate regions not represented within a contig.

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BMC Bioinformatics

ISSN: 1471-2105

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