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Table 4 Time performances for the steps of the consistency algorithm

From: Automatic detection of anchor points for multiple sequence alignment

Algorithm step

RV11

RV12

RV20

RV30

RV40

RV50

MS4

0.83

1.61

18.83

34.08

10.91

13.25

Consistency

0.73

5.22

134.10

160.07

51.76

65.14

  1. Mean values of the time (in s.) taken by the MS4 step and the consistency step for the anchor computation on BAliBASE 3.
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BMC Bioinformatics

ISSN: 1471-2105

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