Table 1 Annotation information output by SeqAnt.
From: SeqAnt: A web service to rapidly identify and annotate DNA sequence variations
Field ID | Annotation Field | Description |
|---|---|---|
1 | Chromosome | Chromosome containing variant site |
2 | Genome Position | Absolute position of variant site on a chromosome |
3 | Gene Name | Name of the locus containing the variant site* |
4 | Gene Strand | Orientation of locus* |
5 | Functional Category | Annotated functional category for variant site |
6 | Reference Allele | Reference allele at the variant site |
7 | Minor Allele | Minor allele at the variant site |
8 | Variation Type | Type of variant (either SNP or Indel) |
9 | Reference Amino Acid | Reference amino acid at variant site** |
10 | Amino Acid Position | Position of the amino acid in the peptide chain** |
11 | Modified Amino Acid | Modified amino acid due to variant site** |
12 | Warnings | Possible errors (if any) detected in the RefSeq annotation |
13 | RefSeq ID | RefSeq ID reported by the UCSC track |
14 | dbSNP ID | dbSNP ID if the variant site has already been reported |
15 | dbSNP Heterozygosity | Corresponding dbSNP heterozygosity if variant site has already been reported |
16 | dbSNP Orientation | Corresponding dbSNP orientation of variant site if it has already been reported |
17 | PhastCons Score | PhastCons score for variant site |
18 | Sample IDs | List of sample IDs with variant (when multiple sample IDs are present) |