Gene/Wind
|
Chr
|
Start
|
End_Pos
|
N_SNPs
|
CaseRV
|
CaseNoRV
|
ContRV
|
ContNoRV
|
ChiSq
|
P-val
|
FisherExPval
|
---|
MGC33212 | 3 | 197456409 | 197583455 | (10/1) | 2 | 1909 | 31 | 2903 | 15.5 | 0.000083 | 1.96E-05 |
PPIC | 5 | 122336979 | 122450324 | (12/6) | 26 | 1877 | 7 | 2906 | 21.44 | 0.0000037 | 5.94E-06 |
NR3C1 | 5 | 142589325 | 142813087 | (24/2) | 8 | 1912 | 47 | 2869 | 14.71 | 0.00013 | 7.28E-05 |
ADAMTS2 | 5 | 178423474 | 178754935 | (30/2) | 62 | 1859 | 44 | 2885 | 16.15 | 0.000059 | No < 30 |
3.8_1.5 | 6 | 29790873 | 29892049 | (43/2) | 26 | 1890 | 10 | 2920 | 16.21 | 0.000057 | 9.74E-05 |
KLF6 | 10 | 3761233 | 3867455 | (14/2) | 14 | 1907 | 1 | 2931 | 18.18 | 0.00002 | 2.13E-05 |
- This file provides summary statistics for all genes that achieved a p value ≤ the p value set by the -pout command line option. The summary file is a tab-delimited file with 12 columns: Gene/Window name, Chromosome, Starting bp position, End bp position, Number of SNPs in the Gene/Window, Number of cases with low frequency/rare variant minor alleles, Number of cases without low frequency/rare variant minor alleles, Number of controls with low frequency/rare variant minor alleles, Number of controls without low frequency/rare variant minor alleles, Chi-Squared Value, Chi-Squared p value, Fisher exact p value.