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Table 1 Insertion-deletion score matrix used by RetAlign.

From: Reticular alignment: A progressive corner-cutting method for multiple sequence alignment

 

- -

- *

* -

* *

- -

-

OP/ 2

OP/ 2

EX

- *

OP/ 2

-

OP

OP/ 2

* -

OP/ 2

OP

-

OP/ 2

* *

EX

OP/ 2

OP/ 2

-

  1. Row: indel pattern formed by two consecutive columns of the 1st sequence, column: that of the 2ndsequence. OP and EX are the gap opening and extension penalty.
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BMC Bioinformatics

ISSN: 1471-2105

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