Table 10 Performance of Fast-COOC when memory size is restricted to 50 MB (max_size = 3, min_r 2 = 0.95)
No memory constraint | mem = 50 MB | |||||
|---|---|---|---|---|---|---|
time | #tag SNPs | mem | time | #tag SNPs | #chunks | |
chr1 | 34.9 | 35556 | 94.41 MB | 35.14 | 35561 | 16 |
chr2 | 42.9 | 35502 | 287.50 MB | 43.14 | 35518 | 21 |
chr3 | 39.3 | 30695 | 119.72 MB | 39.3 | 30706 | 15 |