From: BABAR: an R package to simplify the normalisation of common reference design microarray-based transcriptomic datasets
Number of down-regulated genes detected
Virulence genes
BABAR unique
Both methods
limma unique
SPI1 (40)
1
28
SPI2 (31)
4
10
2
SPI4 (6)
SPI5 (11)
3
0
Other genes
Chemotaxis (9)
5
Flagellae (23)