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Table 3 The enrichment of the selected genes in cancer pathways (FDR < 0.01)

From: Extracting consistent knowledge from highly inconsistent cancer gene data sources

Signal pathway names

p values*

p values**

Ratios

Alpha6Beta4Integrin_pathway(54a)

4.75E-12

0.89

24

AndrogenReceptor_pathway(103)

2.76E-11

1

Inf***

EGFR1_pathway(179)

0

0.64

10.7

Hedgehog_pathway(23)

3.41E-05

0.01

1.75

ID_pathway(25)

1.30E-10

1

Inf

KitReceptor_pathway(69)

0

0.72

16.5

NOTCH_pathway(80)

9.40E-11

0.33

5

TGFBR_pathway(159)

8.29E-13

0.69

9.8

TNFAlphaNFkb_pathway(189)

0

0.82

7.2

Wnt_pathway(105)

0

0.01

2.6

  1. Note: a the number of genes in the pathway;* the p value of the enrichment of the selected genes; ** the p value of the enrichment of the rest cancer genes; *** Inf means none of the rest genes are annotated in the pathway.