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Table 3 Run times for LAST genome alignment

From: Parameters for accurate genome alignment

Genomes

Index Construction

Alignment

G. gallus/H. sapiens

11 min

3.5 hrs

T. rupripes/H. sapiens

3.0 min

2.9 hrs

A. thaliana/O. sativa

51 sec

38 min

S. cerevisiae/S. pombe

5.8 sec

1.6 min

  1. CPU time measured for one core of a 3 GHz Xeon E5450 processor is shown. Each alignment time is the median among 495 alignments.
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BMC Bioinformatics

ISSN: 1471-2105

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