From: Lists2Networks: Integrated analysis of gene/protein lists
Name | Description | Source | GMT File Creator |
---|---|---|---|
WikiPathways_pathways | Biological pathways | Ma'ayan lab | |
Reactome_pathways | Biological pathways | Ma'ayan lab | |
GenMAPP_patwhays | Biological pathways | MSigDB | |
KEGG_pathways | Signaling pathways | MSigDB | |
BioCarta_pathways | Signaling pathways | MSigDB | |
Chromosome_location | Chromosome location | MSigDB | |
TFs_predicted_binidng_sites | TRANSFAC predicted sites | Ma'ayan lab | |
TFs_chip_interactions | ChIP interactions collected from literature by the Ma'ayan lab | Various sources from individual publications | Ma'ayan lab |
Gene_Ontology_BP | Gene Ontology Biological Process | Ma'ayan lab | |
Gene_Ontology_MF | Gene Ontology Molecular Function | Ma'ayan lab | |
Gene_Ontology_CC | Gene Ontology Cellular Component | Ma'ayan lab | |
HMDB_metabolites | Genes associated with Metabolites | Ma'ayan lab | |
OMIM_disease_genes | Genes associated with a specific disease | Ma'ayan lab | |
OMIM_disease_neighborhoods | Genes associated with a specific disease expanded using protein interactions and the genes2networks algorithm | http://www.ncbi.nlm.nih.gov/omim and http://actin.pharm.mssm.edu/genes2networks | Ma'ayan lab |
KEA_kinases | Substrates of protein kinases collected from different databases | Ma'ayan lab | |
PFAM_InterPro_domains | Proteins that share a structural domain | Ma'ayan lab | |
Predcited_microRNAs | Predicted microRNAs that bind to mRNA of sets of genes | http://www.targetscan.org http://microrna.sanger.ac.uk/sequences | Ma'ayan lab |
Protein_interaction_hubs | Proteins that interacts with many other proteins | Protein interactions collected from several mammalian protein interactions databases http://actin.pharm.mssm.edu/genes2networks | Ma'ayan lab |