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Table 3 Average MaxSub scores of test set with 50-99 MSA sequences by different methods

From: Linear predictive coding representation of correlated mutation for protein sequence alignment

Method

Average MaxSub

 

Family

Superfamily

All

PPA

0.4708

0.1714

0.2631

PPA_SS

0.4762

0.1839

0.2734

CMPA_PPA

0.4811

0.1832

0.2744

CMPA_PPA_SS

0.4852

0.1949

0.2838

  1. Family and Superfamily denote the average MaxSub score at SCOP family and superfamily level, and All denotes the average MaxSub score of all samples. PPA and PPA_SS denote profile-profile alignment without and with secondary structure prediction, respectively, and CMPA_PPA and CMPA_PPA_SS denote alignment combining CM profile with PPA and PPA_SS, respectively.
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BMC Bioinformatics

ISSN: 1471-2105

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