SeqRate: sequence-based protein folding type classification and rates prediction

BMC Bioinformatics

Table 1 Correlation between estimated and real contacts and experimental folding rates

	estLRCN	rLRCN	estLRCO	rLRCO	rate
estLRCN	1 (1)	0.78 (0.75)	0.95 (0.84)	0.61 (0.54)	-0.68 (-0.55)
rLRCN	-	1 (1)	0.79 (0.75)	0.87 (0.81)	-0.71 (-0.58)
estLRCO	-	-	1 (1)	0.82 (0.74)	-0.72 (-0.48)
rLRCO	-	-	-	1 (1)	-0.77 (-0.51)
rate	-	-	-	-	1 (1)

Correlation between folding rates and estimated long-range contact number (estLRCN), estimated long-range contact order (estLRCO), real long-range contact number (rLRCN) and real long range contact order (rLRCO) using 37 two-state proteins in IvankovData and 24 multi-stat proteins in IvankovData (data shown in the parentheses).

ISSN: 1471-2105