From: Assessment of genetic variation for the LINE-1 retrotransposon from next generation sequence data
Chromosome | Insert Site Position | NA12878 genotype | NA12891 genotype | NA12892 genotype | LINE-1 Orientation | Gene Locus | Entrez ID | Gene orientation |
---|---|---|---|---|---|---|---|---|
Chr_2 | 144021434 | +/- | +/- | N | - | ARHGAP15 | 55843 | + |
Chr_3 | 38601086 | +/- | +/- | +/- | + | SCN5A | 6331 | - |
Chr_3 | 82073683 | +/- | Y | N | - | Â | Â | Â |
Chr_3 | 125073416 | Y | +/- | Y | + | MYLK | 4638 | - |
Chr_3 | 187854832 | +/- | N | Y | + | Â | Â | Â |
Chr_4 | 132401098 | +/- | +/- | +/- | - | Â | Â | Â |
Chr_4 | 147444745 | +/- | N | Y | + | SLC10A7 | 84068 | - |
Chr_5 (*) | 21243489 | Y | +/- | +/- | + | Â | Â | Â |
Chr_5 | 89486537 | Y | Y | Y | + | Â | Â | Â |
Chr_6 | 102952779 | +/- | +/- | N | - | Â | Â | Â |
Chr_6 (*) | 123895635 | +/- | +/- | N | - | TRDN | 10345 | - |
Chr_7 (*) | 7985552 | +/- | N | +/- | + | GLCCI1 | 113263 | + |
Chr_7 | 53619996 | +/- | Y | ?/? | - | Â | Â | Â |
Chr_10 | 124445220 | Y | +/- | Y | + | Â | Â | Â |
Chr_11 | 109883089 | Y | N | +/- | - | Â | Â | Â |
Chr_12 | 125368882 | +/- | N | +/- | - | Â | Â | Â |
Chr_13 | 60360333 | Y | Y | +/- | - | Â | Â | Â |
Chr_14 | 51737509 | Y | Y | Y | - | Â | Â | Â |
Chr_15 | 31819131 | Y | +/- | +/- | - | RYR3 | 6263 | + |
Chr_15 | 54038444 | +/- | N | +/- | + | NEDD4 | 4734 | - |
Chr_17 (*) | 62067756 | +/- | +/- | N | + | PRKCA | 5578 | + |
Chr_18 | 12481262 | +/- | N | +/- | + | SPIRE1 | 56907 | - |