Table 2 Summary of synteny blocks before and after quota-based screening in the four examples used in this study.
From: Screening synteny blocks in pairwise genome comparisons through integer programming
Example | # of anchors | # of blocks | Percentage of regions exceed quota | Run time | CoGe link | |
|---|---|---|---|---|---|---|
A. thaliana vs. A. lyrata (1:1) | before | 27381 | 388 | 76.3% | 0.73s | |
| Â | after | 20826 | 69 | 0.1% | Â | Â |
A. thaliana vs. poplar (4:2) | before | 16257 | 1084 | 18.4% | 0.55s | |
| Â | after | 14839 | 910 | 1.9% | Â | Â |
A. thaliana vs. A. thaliana (1:1) | before | 6523 | 440 | 22.0% | 0.25s | |
| Â | after | 5477 | 315 | 3.5% | Â | Â |
grape vs. grape (2:2) | before | 4459 | 270 | 9.0% | 0.24s | |
| Â | after | 4297 | 259 | 2.7% | Â | Â |