From: PhyloSim - Monte Carlo simulation of sequence evolution in the R statistical computing environment
Key | Feature* | Dawg v1.1.2 | MySSP v1.0 | Indel-Seq-Gen v1.0.3 | SIMPROT v1.01 | INDELible v1.0 | PhyloSim v0.12 |
---|---|---|---|---|---|---|---|
II | GTR | • | • |  |  | • | • |
II | UNREST |  |  |  |  | • | • |
II | Empirical amino acid models | Â | Â | 3 | 3 | 15 | 11 |
II | User defined amino acid models |  |  |  |  | • | • |
II | Codon models |  |  |  |  | • | • |
III | Combinations of substitution processes |  |  |  |  |  | • |
IV | Discrete gamma |  |  |  |  | • | • |
IV | Continuous gamma | • | • |  | • | • | • |
IV | Proportion of invariant sites | • |  | • |  | • | • |
V | Complex rate variation |  |  |  |  |  | • |
VI | Multiple indel processes |  |  |  |  |  | • |
VII | Rate variation with indel processes |  |  |  |  |  | • |
VIII | Selective constraints on indels |  |  |  |  |  | • |
IX | Partitions |  | • | • | • | • | • |
X | Non-homogeneous evolution |  | • |  |  | • | • |
XI | Full control over inserts |  |  |  |  |  | • |