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Table 1 Computation time

From: TurboFold: Iterative probabilistic estimation of secondary structures for multiple RNA sequences

 

Runtime (seconds) for

 

K = 3

K = 5

K = 10

TurboFold-MEA

136.75

277.9

517.0

RAF

8.25

50.8

214.6

LocARNA

746.44

2815.9

11395.8

CentroidAlifold

2.0

3.7

6.8

RNAalifold

0.2

0.3

0.6

MXScarna

1.5

2.9

5.8

CentroidHomfold

15.9

54.2

210.0

  1. The time requirements (in seconds) of methods on timing/memory datasets. Each column shows the time requirements of the methods on a dataset, indicated by number of sequences.
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BMC Bioinformatics

ISSN: 1471-2105

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