Table 3 Predicted Rearrangments involving PTPN12 in GBM.
From: Detection of recurrent rearrangement breakpoints from copy number data
| Â | Recurrent Gene PTPN12 | Â | Â | ||
|---|---|---|---|---|---|
Gene | Genomic Location | # Patients | |||
PTPN12 | chr7.77004708-77106533 | 16 | |||
| Â | Intrachromosomal Fusion Gene Predictions | Â | Â | ||
5' End Gene | 3' End Gene | # Patients | RMS | ||
PTPN12 | chr7.77005287-77106533 | RSBN1L | chr7.77163678-77246421 | 8 | 0.1081 |
PTPN12 | chr7.77004708-77106533 | LUC7L2 | chr7.138695173-138757626 | 8 | 0.2605 |
| Â | Interchromosomal Fusion Gene Predictions | Â | Â | ||
5' End Gene | 3' End Gene | # Patients | RMS | ||
TMEM30A | chr6.76019357-76051074 | PTPN12 | chr7.77005287-77106533 | 6 | 0.1306 |
RNF150 | chr4.142006174-142273412 | PTPN12 | chr7.77005287-77106533 | 5 | 0.1409 |
PTPN12 | chr7.77005287-77106533 | MED13 | chr17.57374747-57497348 | 9 | 0.1906 |
CLK1 | chr2.201425977-201434830 | PTPN12 | chr7.77005287-77106533 | 8 | 0.3168 |
ZRANB2 | chr1.71301561-71319266 | PTPN12 | chr7.77005287-77106533 | 9 | 0.3250 |
PTPN12 | chr7.77005287-77106533 | UBR1 | chr15.41022389-41185512 | 9 | 0.3475 |
PTPN12 | chr7.77005287-77106533 | LINGO1 | chr15.75692423-75711712 | 8 | 0.3787 |
PPIL3 | chr2.201443923-201460583 | PTPN12 | chr7.77004708-77106533 | 6 | 0.4741 |