Table 4 Memory requirements for real data
From: Efficient alignment of pyrosequencing reads for re-sequencing applications
S. pneumoniae | E. coli | P. falciparum | ||||
|---|---|---|---|---|---|---|
index(Mb) | RAM(Mb) | index(Mb) | RAM(Mb) | index(Mb) | RAM(Mb) | |
BWA-SW | 3 | 27 | 7 | 29 | 34 | 59 |
SSAHA2 | 517 | 788 | 521 | 773 | 552 | 717 |
Newbler | n/a | 600 | n/a | 900 | n/a | 500 |
Segemehl | 31 | 302 | 68 | 328 | 315 | 447 |
GASSST | n/a | 2381 | n/a | 2479 | n/a | 2539 |
TAPyR 50 | 4 | 7 | 8 | 18 | 39 | 64 |
C. elegans | D. pseudoobscura | H. sapiens | ||||
index(Mb) | RAM(Mb) | index(Mb) | RAM(Mb) | index(Mb) | RAM(Mb) | |
BWA-SW | 144 | 149 | 210 | 208 | 118 | 103 |
SSAHA2 | 679 | 1559 | 755 | 1209 | 648 | 680 |
Newbler | n/a | 5100 | n/a | 2300 | n/a | 500 |
Segemehl | 1388 | 2439 | 2025 | 2643 | 1134 | 1299 |
GASSST | n/a | 5657 | n/a | 6967 | n/a | 4752 |
TAPyR 50 | 168 | 270 | 244 | 394 | 137 | 220 |