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Table 5 Performance comparison between different methods in precision and recall for cell wall remodeling pathway.

From: CASCADE_SCAN: mining signal transduction network from high-throughput data based on steepest descent method

Method

Precision (%)

Recall (%)

CASCADE_SCAN (s = 50)

21

69

CASCADE_SCAN (s = 30)

32

64

ILP (λ = 0.15)

56

63

NetSearch

50

56

  1. The results CASCADE_SCAN were obtained from 20 independent experiments using three seed proteins. (PPI score threshold: 0.800, credible PPI score threshold: 0.980, DFS path length: 5). Note, the results of NetSearch and ILP were obtained from Zhao's paper.
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BMC Bioinformatics

ISSN: 1471-2105

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