Table 1 Performance of single terms and the total scoring function of NCACO-score on Decoys'R'Us sets.
From: NCACO-score: An effective main-chain dependent scoring function for structure modeling
| Â | Sizea | E con | E trp | E sol | E beta | E tot | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|
4state_reduced | |||||||||||
1ctf | 630 | 1b | -3.03c | 1 | -5.62 | 3 | -1.92 | 3 | -4.46 | 1 | -5.48 |
1r69 | 676 | 2 | -2.72 | 1 | -4.94 | 29 | -1.64 | -d | - | 1 | -4.47 |
1sn3 | 660 | 1 | -2.52 | 1 | -9.58 | 175 | -0.68 | 46 | -1.51 | 1 | -4.73 |
2cro | 673 | 17 | -1.99 | 1 | -4.74 | 46 | -1.42 | - | - | 1 | -4.36 |
3icb | 654 | 47 | -1.42 | 1 | -3.89 | 21 | -1.48 | 59 | -0.97 | 1 | -3.33 |
4pti | 686 | 9 | -2.34 | 1 | -9.51 | 55 | -1.30 | 147 | -0.62 | 1 | -6.10 |
4rxn | 677 | 27 | -1.65 | 1 | -5.17 | 74 | -1.17 | 3 | -3.74 | 1 | -4.22 |
Average | Â | 14.86 | -2.24 | 1.00 | -6.21 | 57.57 | -1.37 | 51.60 | -2.26 | 1.00 | -4.67 |
Fisa | |||||||||||
1fc2 | 501 | 9 | -1.99 | 499 | 3.32 | 6 | -1.92 | - | - | 461 | 1.68 |
1hdd-C | 501 | 3 | -3.08 | 375 | 0.61 | 1 | -4.27 | - | - | 21 | -1.55 |
2cro | 501 | 13 | -2.10 | 16 | -1.74 | 56 | -1.21 | - | - | 3 | -2.43 |
4icb | 500 | 1 | -3.30 | 4 | -2.28 | 2 | -3.14 | 1 | -42.13 | 1 | -4.43 |
Average | Â | 6.50 | -2.62 | 223.50 | -0.02 | 16.25 | -2.64 | 1.00 | -42.13 | 121.50 | -1.68 |
fisa_casp3 | |||||||||||
1bg8-A | 1200 | 377 | -0.47 | 8 | -2.23 | 850 | 0.55 | - | - | 44 | -1.69 |
1bl0 | 972 | 818 | 1.02 | 1 | -4.30 | 730 | 0.60 | - | - | 3 | -2.46 |
1jwe | 1407 | 387 | -0.64 | 6 | -2.66 | 343 | -0.80 | - | - | 6 | -2.33 |
Average | Â | 527.33 | -0.03 | 5.00 | -3.06 | 641.00 | 0.12 | - | - | 17.67 | -2.16 |
lmds | |||||||||||
1b0n-B | 498 | 4 | -2.54 | 17 | -1.99 | 136 | -0.56 | - | - | 1 | -2.56 |
1bba | 501 | 294 | 0.26 | 498 | 1.69 | 348 | 0.43 | - | - | 497 | 2.02 |
1ctf | 496 | 1 | -2.58 | 1 | -6.53 | 1 | -2.82 | 223 | -0.15 | 1 | -6.28 |
1dtk | 216 | 1 | -2.42 | 86 | -0.36 | 5 | -1.75 | 110 | 0.16 | 8 | -1.64 |
1fc2 | 501 | 71 | -1.10 | 420 | 1.00 | 5 | -2.45 | - | - | 113 | -0.71 |
1igd | 501 | 71 | -1.03 | 1 | -4.30 | 74 | -1.07 | 9 | -2.17 | 1 | -4.38 |
1shf-A | 437 | 35 | -1.42 | 1 | -6.85 | 101 | -0.77 | 111 | -0.57 | 1 | -3.92 |
2cro | 501 | 1 | -6.13 | 2 | -3.20 | 4 | -2.45 | - | - | 1 | -5.58 |
2ovo | 348 | 37 | -1.27 | 1 | -8.53 | 26 | -1.36 | 12 | -2.44 | 1 | -6.60 |
4pti | 344 | 3 | -2.54 | 1 | -6.28 | 14 | -1.78 | 245 | 0.81 | 1 | -3.48 |
Average | Â | 51.80 | -2.08 | 102.80 | -3.54 | 71.40 | -1.46 | 118.33 | -0.73 | 62.50 | -3.31 |
lattice_ssfit | |||||||||||
1beo | 1998 | 61 | -2.06 | 1 | -19.51 | 1 | -3.43 | 41 | -1.76 | 1 | -13.89 |
1ctf | 1999 | 1 | -4.03 | 1 | -10.97 | 1 | -3.48 | 1 | -10.64 | 1 | -13.75 |
1dkt-A | 1995 | 82 | -1.79 | 1 | -7.28 | 64 | -1.83 | 1 | -12.29 | 1 | -8.07 |
1fca | 2001 | 72 | -1.96 | 1 | -8.82 | 65 | -1.84 | 1 | -11.71 | 1 | -7.74 |
1nkl | 1995 | 1 | -3.86 | 1 | -4.44 | 2 | -3.28 | - | - | 1 | -6.36 |
1pgb | 1997 | 65 | -1.98 | 1 | -15.56 | 45 | -1.99 | 1 | -28.85 | 1 | -16.66 |
1trl-A | 1999 | 347 | -0.97 | 1 | -7.49 | 527 | -0.63 | - | - | 1 | -7.58 |
4icb | 1998 | 525 | -0.63 | 1 | -8.75 | 2 | -2.84 | 33 | -1.56 | 1 | -8.73 |
Average | Â | 144.25 | -2.16 | 1.00 | -10.35 | 88.38 | -2.42 | 13.00 | -11.14 | 1.00 | -10.35 |
Summary | |||||||||||
Average | Â | 105.75 | -2.01 | 61.00 | -5.34 | 119.13 | -1.68 | 58.17 | -6.92 | 36.84 | -5.06 |