Figure 8
From: Structator: fast index-based search for RNA sequence-structure patterns
Experiment 2: Influence of loop length and number of non-ambiguous characters in loop region on total running time of BIDsearch and ONLsearch. We measured the running time in milliseconds to search with artificial RSSPs with loops of varying length l ∈ {3, ... , 20} on ~ 622 MB of RNA sequence data. For each loop length l we also varied the number q ∈ {0, ... , 4} of non-ambiguous nucleotides in the loop. The used RSSPs had a fixed stem length of 7. For more details on this experiment see corresponding text.