| 0.99 | 0.97 | 0.95 |
---|
DNACLUST exact | 204 | 372 | 960 |
UCLUST exact | Â | 7800 | 5040 |
DNACLUST inexact | 74 | 76 | 150 |
UCLUST inexact | 43 | 29 | 16 |
- The running times (minutes) of DNACLUST and UCLUST with various similarity thresholds on the RDP dataset.
- The running times were measured on a single 2.8GHz processor of an AMD64 Linux workstation. The command line options were:
-
dnaclust infile.fasta -l -s 0.9x -k 5 [--approximate-filter] > outfile.cluster uclust --input infile-sorted.fasta --uc outfile.cluster --id 0.9x [--exact]