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Table 1 Measures

From: Unraveling gene regulatory networks from time-resolved gene expression data -- a measures comparison study

MEASURE

"SIMPLE" (PAIRWISE)

CONDITIONAL

PARTIAL

Euclidean distance

μ EC , [63]

-

-

Ls Norm (here s = 10)

μ L , [64] (in literature s = 3)

-

-

Manhattan distance

μ MA , [64]

-

-

dynamic time warping distance

μ W , [43]

-

-

Pearson's correlation

μ P , [65]

, [22] (*)

, [23]

Spearman's correlation

μ S , [66]

-

-

Kendall's correlation

μ K , [67]

-

-

mutual information

μ I , [66]

, [25]

(new)

coarse-grained information rate

, [52] (*)

, [52] (*)

-

Granger causality index

μ G , [68]

, [34]

, [34]

symbol sequence similarity

, [38] (*)

-

-

mutual information of symbol sequence

, [38] (*)

-

-

mean of symbol sequence similarity and μI

, [38] (*)

-

-

conditional entropy of symbol sequence

-

, [38] (*)

-

  1. This table summarizes all measures of interaction included in this study. Those are marked by (*) which, to our knowledge, have not been applied to gene expression before.