|  | qRT-PCR Poly(A) RNA | IsoformEx | Cufflinks[20] (v0.9.3) (--min-isoform-fraction 0) | ||||||
---|---|---|---|---|---|---|---|---|---|---|
Symbol | TranscriptID | HME | MCF-7 | FC b | HME | MCF-7 | FC b | HME | MCF-7 | FC b |
TRAP1 | uc002cvt.2 | 234.7 | 302.3 | 0.4 | 27.4 | 43.9 | 0.7 | 22.3 | 33.2 | 0.6 |
TRAP1 | uc002cvs.1 | 423.5 | 595.4 | 0.5 | 40.9 | 56.0 | 0.5 | 0.8 | 1.6 | 1.0 |
 | FCw | 0.9 | 1.0 |  | 0.6 | 0.4 |  | -4.8†| -4.4†|  |
ZNF581 | uc002qlq.1 | 621.8 | 755.9 | 0.3 | 8.3 | 23.5 | 1.5 | 8.1 | 20.0 | 1.3 |
ZNF580 | uc002qlp.1 | 277.9 | 381.3 | 0.5 | 7.7 | 14.4 | 0.9 | 2.2 | 5.3 | 1.3 |
 | FCw | -1.2 | -1.0 |  | -0.1 | -0.7 |  | -1.9 | -1.9 |  |
WISP2 | uc002xmn.1 | 10.7 | 530.0 | 5.6 | 1.8 | 14.7 | 3.0 | 0.0 | 12.0 | 6.9‡ |
WISP2 | uc002xmo.1 | 8.1 | 189.6 | 4.5 | 0.5 | 8.4 | 4.2 | 0.0 | 4.2 | 5.4‡ |
 | FCw | -0.4 | -1.5 |  | -2.0 | -0.8 |  | 0.0‡ | -1.5 |  |
HIST1H2BD | uc003ngr.1 | 12.4 | 317.8 | 4.7 | 0.7 | 6.9 | 3.3 | 4.3 | 55.9 | 3.7 |
HIST1H2BD | uc003ngs.1 | 538.2 | 19207.9 | 5.2 | 10.9 | 136.3 | 3.6 | 0.9 | 16.2 | 4.1 |
 | FCw | 5.4 | 5.9 |  | 4.0 | 4.3 |  | -2.2†| -1.8†|  |