Table 3 Description of functional categories
From: NETGEM: Network Embedded Temporal GEnerative Model for gene expression data
MIPS ID | Description of functional categories |
|---|---|
01.03.01 | purin nucleotide/nucleoside/nucleobase metabolism |
10 | cell cycle and DNA processing |
10.01.09 | DNA restriction or modification |
10.03.01 | mitotic cell cycle and cell cycle control |
11.04.02 | tRNA processing |
12 | protein synthesis |
12.01.01 | ribosomal proteins |
14.04 | protein targeting, sorting and translocation |
14.13.01 | cytoplasmic and nuclear protein degradation |
16 | protein with binding function or cofactor requirement (structural or catalytic) |
16.02 | peptide binding |
16.03.03 | RNA binding |
16.21 | complex cofactor/cosubstrate/vitamine Binding |
20.01.10 | protein transport |
20.01.15 | electron transport |
20.01.27 | drug/toxin transport |
20.09.03 | peroxisomal transport |
20.09.07 | vesicular transport (Golgi network, etc.) |
30 | cellular communication/signal transduction mechanism |
32.01.04 | pH stress response |
32.05.05 | virulence, disease factors |
32.07 | detoxification |
32.07.07 | oxygen and radical detoxification |
34.07.02 | cell-matrix adhesion |
40.01.03 | directional cell growth (morphogenesis) |
40.01.05 | growth regulators/regulation of cell size |
42.04.03 | actin cytoskeleton |
42.04.05 | microtubule cytoskeleton |
42.29 | bud/growth tip |