Table 3 Class-level assignment of EBPR reads with A. phosphatis included or excluded from the training set
From: Classifying short genomic fragments from novel lineages using composition and homology
| Â | BLASTNa (inc.) | BLASTNa (excl.) | NB-BLa (inc.) | NB-BLa (excl.) | LCAb (inc.) | LCAb (excl.) | LCAb+NB (inc.) | LCAb+NB (excl.) |
|---|---|---|---|---|---|---|---|---|
Betaproteobacteria | 61.9 | 20.1 | 67.7 | 37.8 | 61.4 | 18.4 | 52.3 | 9.0 |
Gammaproteobacteria | 5.4 | 8.2 | 10.0 | 19.8 | 5.1 | 7.2 | 1.9 | 2.5 |
Alphaproteobacteria | 3.2 | 4.6 | 6.8 | 15.1 | 3.0 | 4.0 | 2.3 | 2.6 |
Deinococci | 3.0 | 6.8 | 0.57 | 2.0 | 2.9 | 6.4 | 0.02 | 0.02 |
Actinobacteria | 0.64 | 1.2 | 2.4 | 6.9 | 0.56 | 0.97 | 0.20 | 0.22 |
Other | 1.1 | 1.6 | 12.5 | 18.4 | 0.84 | 1.6 | 73.2 | 0.26 |
Unclassified | 24.8 | 57.5 | 0.0 | 0.0 | 26.2 | 61.4 | 42.3 | 85.4 |